PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027974-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 169aa    MW: 19224.5 Da    PI: 7.7634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027974-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19755254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  WALNUT_00027974-RA  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                        8*******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-34663No hitNo description
PROSITE profilePS5103220.705764IPR001471AP2/ERF domain
PfamPF008471.5E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-34764IPR001471AP2/ERF domain
SMARTSM003808.0E-41770IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21765IPR016177DNA-binding domain
PRINTSPR003672.6E-11819IPR001471AP2/ERF domain
PRINTSPR003672.6E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MARPQKRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFSYNPNES QSNSSKLLSE TLTAKLNKCH LASLQMAKNS AENEPQAPHE HTHFSPSNGI  120
AGKSGEKGQV ESSDHHQQFK TLEDDHIEQM IEELLYYGSI ELRNIVVPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A8e-17671470ATERF1
2gcc_A8e-17671470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427548.13e-79hypothetical protein CICLE_v10026602mg
SwissprotQ94AW55e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A151R7L61e-79A0A151R7L6_CAJCA; Ethylene-responsive transcription factor ERF003 family
STRINGGLYMA07G02930.17e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-60ERF family protein